Multiple Fasta Format Example

Try running ReadSeq.

FASTA format is a greater-than sign, followed by a sequence name on the first line, the sequence starts on the second line. The next greater-than sign marks the start of the next sequence. Do not include blank lines.

>Sequence One Name
SequenceOne
MoreSequenceOne
>Sequence Two Name
SequenceTwo
>Sequence Three Name
SequenceThree
MoreSequenceThree

For example:

>gi|1924927|gnl|PID|e250502 xylulokinase
MKYVIGIDLGTSAVKTVLVDTKGKICAVVSKNYPLLHEKTGYSEQNPEEWVQQTASALSELIANANIKPE
DIEGISYSGQMHGLVMLDENYNLLRNAILWNDTRTTEQCHHLYKVIGEKRLLKITKNQALEGFTLPKLLW
VKEYEPAIFEKTAVFMLPKDYLRFKMTGFIHSEYSDAAGTLLLNISKKKWDDELCQLAGININLCPPLVE
SSECIGNISEAFSQKNGISHFNETYLQVELIMLAEQLAPVFYHQGKHYVVLGHRVLFFLMRNEAIETLYG
KVHYFNHGKENAFYTMGVTLSAGHSLGWFKDNFAKNVTFEELLADLKNVPIGSNGLLFTPYLVGERTPHA
DATIRGSFIGMDASHKKRDFTRAVIEVLRFLNESIESSRNEKLRLCYHGEQMIMLNSSRRFNAKIVKLST
EQGPALGAAMLAAYGCGWYKLIGRVCNVFITSSKTYYPNAEHVQVYKQLYELYKEVYLQTNDLSKKLGEF
KRK
>gi|1789987 xylulokinase
MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKA
LGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEP
EIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITG
ALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHA
LPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFF
GLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGG
DVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAYQPRRETFRRLYQQLLPLMA
>gi|466702 xylulokinase
MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKA
LGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEP
EIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITG
ALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHA
LPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFF
GLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGG
DVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAYQPRRETFRRLYQQLLPLMA
>gi|1546887|gnl|PID|e266084 Xylulokinase
MEYVIGVDLGTSTVKIILVNQRGELCGEVSKPFSIIEPHSGYSEQDPAEWADKTKEAIKELVGHFPGKAS
QIKGVSFSGQMHGLVLLNGKGEVLRNAILWNDTRTTEQCRLINDKIGKERLLEIAKNPALEGFTLPKLLW
VKEYEKELFEKAAVFLLPKDYVRYTMTGRLHSEYSDAAGTLLLDVRHQTWSGEICRKLGIPESLCPDLIE
PGACVGGLRPEFAAETGLSPEVKVFAGADNACGRVAILKEGTALCSIGTSGLFSHMNQTVYKSLWQYSFL
NHAAPMLLFVGVTLSAGRIHWYKMYLRHAFAIITDIAIAWAGLLLPLLSGERTPHADADIASFIGMDSAH
TRADFVRAVIEGITFSLHESIEQSAAGGKDISRVISIGGGAKSNQWLQIQADIFNADIIRLTSEQGPAYG
AAMIAASGAAGFRRLRLVQTDSFSSKKPFRPAVNTADNTKLSFKFTEMSTGTRKR


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BCM HGSC