PIMA Multiple Sequence Alignment (@BCM)

PIMA Multiple Sequence Alignment (@BCM)

Cut and paste sequences here (ReadSeq formats accepted;
All sequences must be in the same format type; max 20,000 chars, total):

Cluster name :

Cluster method(s):

Pattern Alphabet/Score-matrix:

The default gap penalties for each matrix are:

Matrix    Gap open    Gap extension
------    --------    -------------
class1     6.67        1.33
patgen    44.00        4.00

Gap open penalty (length independent):

Gap extension penalty (length dependent):

Include intermediate patterns

Additional Options:

Credits:
PIMA: Randall F. Smith, Dept. of Molecular & Human Genetics, Baylor College of Medicine (rsmith@bcm.tmc.edu) & Temple F. Smith, Molecular Bio-Enginnering Research Center, Boston Univ. (tsmith@darwin.bu.edu).
PIMA Server @BCM: Kim C. Worley & PamCulpepper, Human Genome Center, Baylor College of Medicine , (Email)

Last change: Thu Feb 15 09:05:04 CST 1996